mmvec
source: https://github.com/biocore/mmvec
install guide:
Directions
To install mmvec in your existing qiime2 environment, run the following commands
conda install mmvec -c conda-forge
More details on how to make sense of the mmvec output can be found on the main github page.
Description
The algorithm for quantifying microbe-metabolite interactions is mmvec short of microbe-metabolite vectors.
mmvec learns a low dimensional representation of microbes and metabolites, which can be used to infer microbe-microbe interactions,
metabolite-metabolite interactions as well as microbe-microbe interactions by estimating their co-occurrence probabilities.
The commandline for mmvec can be accessed via
qiime mmvec --help
See the Readme here for details about how to use this software package.
Bugs should be reported at the corresponding github issue tracker
And any questions will be addressed on the QIIME2 Forum - but make sure to include the mmvec tag.